Basic Information
VIS ID
TVIS20001146
Fusion event
HPV-RASA3 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
25581428
Virus Sequence
Virus name
HPV
Reference genome
NC_001526.2;HQ537777.1
Host Sequence
Chromosome
chr13
Cytoband
q34
Reference genome
GRCh37/hg19
Start
114847125/114081650 (Hg38)
End
114847125/114081650 (Hg38)
Location type
Intronic
Target gene
RASA3
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-92a-3p
Nearest miRNA
hsa-mir-1267/Upstream/818651; hsa-mir-4502/Downstream/162855;
Nearest TSS
ENST00000623511/Upstream/45457; ENST00000643687/Downstream/50961;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/5545, chr13-CpG: 323/Downstream/1875
Upstream sequence
gcttcttgtagatactggataccagatctttgtcagatgcatagtttgcaaatattttatcccattctgtaggttgtctgtttactctgttgatggtgtc
Downstream sequence
ttttgttctgcaggagatgtatagttcaattaggttctacttgccaatttttgttttcatcgcaattgcttttggagtgtttgtcatgaaatctttgcta
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
Curate