Basic Information
VIS ID
TVIS20001202
Fusion event
HPV-MIR924HG integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
25581428
Virus Sequence
Virus name
HPV
Reference genome
NC_001526.2;HQ537777.1
Host Sequence
Chromosome
chr18
Cytoband
q12.2
Reference genome
GRCh37/hg19
Start
36854576/39274612 (Hg38)
End
36854576/39274612 (Hg38)
Location type
Intronic
Target gene
MIR924HG
Nearest miRNA
hsa-mir-1-2/Upstream/1617397; hsa-mir-122/Downstream/347511;
Nearest TSS
ENST00000575820/Upstream/586614; ENST00000637744/Downstream/39628;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/1706947, chr18-CpG: 34/Downstream/566884
Upstream sequence
actgaccctgttcatagctaaggtcaactgcttcatttgtgcattaagtctcacctgctcccacctgcttaagaacattgcttggcaattctgctcctgc
Downstream sequence
cccttcaatacatgatttgcagcaattggaattccttctagcatttctccttcacagcagcacactgttaacctttctcagcagagggtgcttgagggac
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
Curate