Basic Information
VIS ID
TVIS20001248
Fusion event
HPV-SYNDIG1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
Virus Sequence
Virus name
HPV
Reference genome
NC_001526.2;HQ537777.1
Host Sequence
Chromosome
chr20
Cytoband
p11.21
Reference genome
End
24554181/24573545 (Hg38)
Location type
Intronic
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-103a-2/Upstream/6102854; hsa-mir-1-1/Downstream/1634641;
Upstream sequence
GGACTATCACAACACCTGTCCAGTTGGCCTCTCTGTCTACTCTTTCCACGCCTAGGTTATAAATTACTCAGTTGTAGCTATTATACCTCATAACTTTCTG
Downstream sequence
AGTATCATCGCCAGCTTACACTGATGGCCTGCTGCGCCCTGGTCACTTTGACCTGAATCACGTAGTGATCTTTCACACCAAGTCCTGGAAAGCTTTGGCC
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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