Basic Information
VIS ID
TVIS20001272
Fusion event
HPV-SIDT1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
25581428
Virus Sequence
Virus name
HPV
Reference genome
NC_001526.2;HQ537777.1
Host Sequence
Chromosome
chr3
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
113317417/113598570 (Hg38)
End
113317417/113598570 (Hg38)
Location type
Intronic
Target gene
SIDT1
miRNAs that regulate target gene
hsa-mir-26b-5p
Nearest miRNA
hsa-let-7g/Upstream/3628; hsa-mir-12124/Downstream/717905;
Nearest TSS
ENST00000440867/Upstream/5867; ENST00000468728/Downstream/2786;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/65127, chr3-CpG: 81/Downstream/97490
Upstream sequence
TCAGAAAGTTTTTTAATGTAATAAAATATTTTGTTCATGCTTTATGCCTGTAGTTCAGTGTGAAGAAAATTCTTCCTCAACCCCAGGTTGAGGTATAAAT
Downstream sequence
GAAACAAGTTTTCACTGAGACCAATTCAAGGAATCACTATccatccactatctgagtgactgggcaaattacttgatctctcagcatctcccttttatca
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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