Basic Information
VIS ID
TVIS20001279
Fusion event
HPV-HTT integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
25581428
Virus Sequence
Virus name
HPV
Reference genome
NC_001526.2;HQ537777.1
Host Sequence
Chromosome
chr4
Cytoband
p16.3
Reference genome
GRCh37/hg19
Start
3116539/3114812 (Hg38)
End
3116539/3114812 (Hg38)
Location type
Intronic
Target gene
HTT
miRNAs that regulate target gene
hsa-mir-26b-5p ; hsa-mir-421 ; hsa-mir-324-5p ; hsa-mir-106b-5p ; hsa-mir-17-5p ; hsa-mir-16-5p ; hsa-let-7b-5p
Nearest miRNA
hsa-mir-4800/Upstream/864656; hsa-mir-12113/Downstream/2808463;
Nearest TSS
ENST00000502981/Upstream/40131; ENST00000506137/Downstream/517;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/39981, chr4-CpG: 73/Downstream/134088
Upstream sequence
ctgtcgcccaggctggagtgcagtggtgcgatctcggctcactgcagcctcgaccactcaggatcaagagatcctcccacctcagcctccggggctggga
Downstream sequence
ACAGTTTGTGGGTAGTATGCGGTCATGTCCAGTTAAATTGCAGATATTTCCGATCGAAGATGTTCCAGTCCTGAGAACTTCGTGACATTAGCAGGACTTC
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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