Basic Information
VIS ID
TVIS20001294
Fusion event
HPV-LINC02462 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
25581428
Virus Sequence
Virus name
HPV
Reference genome
NC_001526.2;HQ537777.1
Host Sequence
Chromosome
chr4
Cytoband
q28.3
Reference genome
GRCh37/hg19
Start
135389579/134468424 (Hg38)
End
135389579/134468424 (Hg38)
Location type
Intronic
Target gene
LINC02462
Nearest miRNA
hsa-mir-12113/Upstream/8961117; hsa-mir-1305/Downstream/8875036;
Nearest TSS
ENST00000502981/Upstream/44557; ENST00000504882/Downstream/290975;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/1315951, chr4-CpG: 21/Downstream/475801
Upstream sequence
ttctttgggttaaatctggttggtgttctataaccttattgtgcttgaatgctgatatctttctttggatttgggaagttctctgatgtctctttgaata
Downstream sequence
gtcatagcaccttgcctttgcaaggtccattggaaagcttctaccatttataagtaagagggactaatacattataacccaatcatggttgtgatatccc
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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