Basic Information
VIS ID
TVIS20001299
Fusion event
HPV-FNIP2 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
25581428
Virus Sequence
Virus name
HPV
Reference genome
NC_001526.2;HQ537777.1
Host Sequence
Chromosome
chr4
Cytoband
q32.1
Reference genome
GRCh37/hg19
Start
159747809/158826657 (Hg38)
End
159747809/158826657 (Hg38)
Location type
Intronic
Target gene
FNIP2
miRNAs that regulate target gene
hsa-mir-186-5p ; hsa-mir-507 ; hsa-mir-557 ; hsa-mir-450b-5p ; hsa-mir-3680-3p ; hsa-mir-129-5p ; hsa-mir-4666b ; hsa-mir-5011-3p ; hsa-mir-6797-3p ; hsa-mir-6076
Nearest miRNA
hsa-mir-12113/Upstream/6290141; hsa-mir-1305/Downstream/302145;
Nearest TSS
ENST00000502981/Upstream/20563; ENST00000504715/Downstream/5423;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/56986, chr4-CpG: 149/Downstream/275978
Upstream sequence
AGTCACCTCATAAAGGTCAGCAGTCTCTTGAAGTTCAGGGTCCTGAACCAGACACCTCCTGTATTACAATGAATGATGTCCACCTGTACAGGGAGGTGTG
Downstream sequence
GGGTAGAGTGAGGATAGAGCAGCTCTTGATCCCTTGGAACCAGAATGGGAATGGTAAAGTAACATGTTTAAGGTGAGGAGAGTCTGATCCTTTCTGGGTC
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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