Basic Information
VIS ID
TVIS20001394
Fusion event
HPV-CHMP1B2P integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
Virus Sequence
Virus name
HPV
Reference genome
NC_001526.2;HQ537777.1
Host Sequence
Chromosome
chrX
Cytoband
q21.1
Reference genome
End
79572816/80317317 (Hg38)
Location type
Intronic
Target gene
Nearest miRNA
hsa-let-7f-2/Upstream/1416068; hsa-mir-105-1/Downstream/3908435;
Upstream sequence
AATTATAGGCATTGCCCTCATATCTATTTTAGAATAACTACACTCCACAAGTCAAAGATGGGTGGGGAAGAGATAAACTCCCATCTCTTCGGGACACACA
Downstream sequence
tttactcactctactatttgtagtagaactacatactgtagcactatcagagtagaataccggacacagaatctcaattaccatagcattttggttaatt
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
Curate