Basic Information
VIS ID
TVIS20001556
Fusion event
HPV-FAM189A1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
25581428
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
NC_001526.2
Host Sequence
Chromosome
chr15
Cytoband
q13.1
Reference genome
GRCh37/hg19
Start
29535489/29243285 (Hg38)
End
29535489/29243285 (Hg38)
Location type
Intronic
Target gene
FAM189A1
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-1268a/Upstream/752440; hsa-mir-10393/Downstream/1821747;
Nearest TSS
ENST00000557528/Upstream/46598; ENST00000536835/Downstream/26544;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/127259, chr15-CpG: 75/Downstream/26005
Upstream sequence
CTGGGCCCATGGAACTGTGGACACCCAGGACTCTCAAAAATTGGGAATCAGCAGAAGTTTAAAAGTGAAGTAAAAGCACAAATGGCAGAATATGAAAAAA
Downstream sequence
GTAGAAATTAGGGGCCACATGTTCTCATGCAATGACGTTAGAAATTAACAGTAAAAGGAAAGCAAAAAACCAAAAAGTCTAACTACCTAAAAAGTTAAGG
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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