VISDB Viral Integration Site DataBase

VIS ID

TVIS20001579

Fusion event

HPV-IGF1R integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2015

PubMed ID

Virus name

HPV

Subtype

HPV16

Reference genome

Chromosome

chr15

Cytoband

q26.3

Reference genome

Start

End

99349120/98805891 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-122-5p ; hsa-mir-133b ; hsa-mir-145-5p ; hsa-mir-7-5p ; hsa-mir-138-5p ; hsa-mir-194-5p ; hsa-mir-99a-5p ; hsa-mir-223-3p ; hsa-mir-100-5p ; hsa-mir-497-5p ; hsa-mir-152-3p ; hsa-mir-139-5p ; hsa-mir-376c-3p ; hsa-mir-376a-3p ; hsa-mir-181b-5p ; hsa-mir-383-5p ; hsa-mir-335-5p ; hsa-mir-215-5p ; hsa-mir-183-5p ; hsa-mir-182-5p ; hsa-mir-196a-5p ; hsa-mir-192-5p ; hsa-mir-30a-5p ; hsa-let-7d-5p ; hsa-mir-1226-3p ; hsa-mir-484 ; hsa-mir-320a ; hsa-mir-34a-5p ; hsa-mir-92a-3p ; hsa-let-7e-5p ; hsa-mir-125b-2-3p ; hsa-let-7c-5p ; hsa-mir-16-5p ; hsa-mir-630 ; hsa-let-7b-5p ; hsa-mir-143-3p ; hsa-mir-133a-3p ; hsa-mir-140-5p ; hsa-mir-150-3p ; hsa-mir-375 ; hsa-mir-511-3p ; hsa-mir-548n ; hsa-mir-548t-5p ; hsa-mir-3609 ; hsa-mir-548ah-5p ; hsa-mir-548at-5p ; hsa-mir-548az-5p ; hsa-let-7a-2-3p ; hsa-let-7g-3p ; hsa-mir-503-5p ; hsa-mir-4670-3p ; hsa-mir-583 ; hsa-mir-885-5p ; hsa-mir-4668-5p ; hsa-mir-6124 ; hsa-mir-7151-5p ; hsa-let-7a-5p ; hsa-let-7f-5p ; hsa-mir-33a-3p ; hsa-mir-98-5p ; hsa-let-7g-5p ; hsa-let-7i-5p ; hsa-mir-577 ; hsa-mir-1294 ; hsa-mir-3927-3p ; hsa-mir-3935 ; hsa-mir-4458 ; hsa-mir-4500 ; hsa-mir-5586-3p ; hsa-mir-6740-5p ; hsa-mir-6831-5p ; hsa-mir-1275 ; hsa-mir-4665-5p ; hsa-mir-3919 ; hsa-mir-8485 ; hsa-mir-625-5p ; hsa-mir-3148 ; hsa-mir-4641 ; hsa-mir-4710 ; hsa-mir-4792 ; hsa-mir-302a-3p ; hsa-mir-302b-3p ; hsa-mir-302c-3p ; hsa-mir-302d-3p ; hsa-mir-372-3p ; hsa-mir-373-3p ; hsa-mir-520e ; hsa-mir-520a-3p ; hsa-mir-520b ; hsa-mir-520c-3p ; hsa-mir-520d-3p ; hsa-mir-1253 ; hsa-mir-302e ; hsa-mir-4299 ; hsa-mir-3646 ; hsa-mir-3662 ; hsa-mir-6770-5p ; hsa-mir-7855-5p ; hsa-mir-99b-5p ; hsa-mir-378a-3p ; hsa-mir-224-3p ; hsa-mir-522-3p ; hsa-mir-1468-3p ; hsa-mir-885-3p ; hsa-mir-3613-3p ; hsa-mir-190a-3p ; hsa-mir-1277-5p ; hsa-mir-5011-5p ; hsa-mir-548d-3p ; hsa-mir-548h-3p ; hsa-mir-548z ; hsa-mir-548ac ; hsa-mir-548as-3p ; hsa-mir-548bb-3p ; hsa-mir-5681a ; hsa-mir-34a-3p ; hsa-mir-539-5p ; hsa-mir-1827 ; hsa-mir-1910-3p ; hsa-mir-3617-3p ; hsa-mir-6511a-5p ; hsa-mir-8060 ; hsa-mir-96-5p ; hsa-mir-1271-5p ; hsa-mir-3125 ; hsa-mir-3916 ; hsa-mir-6859-5p ; hsa-mir-592 ; hsa-mir-597-5p ; hsa-mir-520a-5p ; hsa-mir-525-5p ; hsa-mir-2467-3p ; hsa-mir-185-5p ; hsa-mir-206 ; hsa-mir-21-5p ; hsa-mir-26b-5p ; hsa-mir-486-5p ; hsa-mir-218-5p ; hsa-mir-4535 ; hsa-mir-4800-5p ; hsa-mir-8071 ; hsa-mir-6745 ; hsa-mir-363-5p ; hsa-mir-8085 ; hsa-mir-3175 ; hsa-mir-6731-5p ; hsa-mir-659-5p ; hsa-mir-492 ; hsa-mir-6861-3p ; hsa-mir-6804-5p ; hsa-mir-5572 ; hsa-mir-4260 ; hsa-mir-450a-2-3p ; hsa-mir-6803-5p ; hsa-mir-6751-5p ; hsa-mir-7109-5p ; hsa-mir-4789-5p ; hsa-mir-466 ; hsa-mir-5010-5p ; hsa-mir-4525 ; hsa-mir-7111-5p ; hsa-mir-6870-5p ; hsa-mir-5698 ; hsa-mir-4723-5p ; hsa-mir-202-3p ; hsa-mir-3163 ; hsa-mir-4643 ; hsa-mir-4789-3p ; hsa-mir-340-5p ; hsa-mir-4539 ; hsa-mir-3200-5p ; hsa-mir-7161-5p ; hsa-mir-548u ; hsa-mir-3191-5p ; hsa-mir-6873-3p ; hsa-mir-7978 ; hsa-mir-494-3p ; hsa-mir-4456 ; hsa-mir-548q ; hsa-mir-6824-3p ; hsa-mir-6764-3p ; hsa-mir-518c-5p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-4423-3p ; hsa-mir-449c-5p ; hsa-mir-34b-5p ; hsa-mir-2682-5p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-551b-5p ; hsa-mir-548c-3p ; hsa-mir-675-3p ; hsa-mir-223-5p ; hsa-mir-7157-5p ; hsa-mir-4310 ; hsa-mir-4655-5p ; hsa-mir-224-5p ; hsa-mir-502-5p ; hsa-mir-3941 ; hsa-mir-3124-3p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-4433b-5p ; hsa-mir-203a-3p ; hsa-mir-6794-3p ; hsa-mir-377-3p ; hsa-mir-4433a-5p ; hsa-mir-342-3p ; hsa-mir-6884-3p ; hsa-mir-4639-3p ; hsa-mir-4511 ; hsa-mir-629-3p ; hsa-mir-3180-5p ; hsa-mir-488-5p ; hsa-mir-7161-3p ; hsa-mir-6738-3p ; hsa-mir-544a ; hsa-mir-5001-3p ; hsa-mir-4727-5p ; hsa-mir-570-3p ; hsa-mir-125b-1-3p ; hsa-mir-588 ; hsa-mir-4701-5p ; hsa-mir-6727-5p ; hsa-mir-6084 ; hsa-mir-6762-3p ; hsa-mir-4755-3p ; hsa-mir-6774-5p ; hsa-mir-635 ; hsa-mir-4508 ; hsa-mir-6775-5p ; hsa-mir-5090 ; hsa-mir-10b-3p ; hsa-mir-6867-5p ; hsa-mir-5003-5p ; hsa-mir-15b-3p ; hsa-mir-7-1-3p ; hsa-mir-125b-5p ; hsa-mir-141-3p ; hsa-mir-214-5p ; hsa-mir-448 ; hsa-mir-217

Nearest miRNA

hsa-mir-10393/Upstream/21389; hsa-mir-1302-10/Downstream/3154568;

Nearest TSS

Nearest CpG islands

None/Target, chr15-CpG: 55/Upstream/98102, chr15-CpG: 47/Downstream/46314

Nearest cancer related gene

IGF1R(OG, No orient, 0)

Upstream sequence

aagtcaatcaaccttcctgtacctcagtttcttcatttgtaaagtgaagatggtagcagcacctgcatgggttgttgaggataaaataggttcatatatg

Downstream sequence

tgcagttctgacactcaccacctggagttagcacagactccacagggatgagggttcagtcccacgagtctgcccttgctgcagatgcgagtagcaggta