VISDB Viral Integration Site DataBase

VIS ID

TVIS20001602

Fusion event

HPV-PHF12 integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2015

PubMed ID

Virus name

HPV

Subtype

HPV16

Reference genome

Chromosome

chr17

Cytoband

q11.2

Reference genome

Start

End

27240190/28913172 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-221-3p ; hsa-mir-320b ; hsa-mir-454-3p ; hsa-mir-652-3p ; hsa-mir-92a-3p ; hsa-mir-1184 ; hsa-mir-138-2-3p ; hsa-mir-486-3p ; hsa-mir-513c-5p ; hsa-mir-514b-5p ; hsa-mir-328-5p ; hsa-mir-3688-5p ; hsa-mir-6880-5p ; hsa-mir-6721-5p ; hsa-mir-6809-5p ; hsa-mir-766-5p ; hsa-mir-6077 ; hsa-mir-4722-5p ; hsa-mir-4795-5p ; hsa-mir-6743-5p ; hsa-mir-4459 ; hsa-mir-4688 ; hsa-mir-3925-5p ; hsa-mir-31-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6778-5p ; hsa-mir-6799-5p ; hsa-mir-1233-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-6797-5p ; hsa-mir-1249-5p ; hsa-mir-765 ; hsa-mir-4784 ; hsa-mir-3150b-3p ; hsa-mir-6822-5p ; hsa-mir-6750-5p ; hsa-mir-4779 ; hsa-mir-6753-5p ; hsa-mir-203b-3p ; hsa-mir-7158-3p ; hsa-mir-4671-3p ; hsa-mir-6073 ; hsa-mir-4668-5p ; hsa-mir-298 ; hsa-mir-5681a ; hsa-mir-20b-3p ; hsa-mir-5584-5p ; hsa-mir-3158-5p ; hsa-mir-142-3p ; hsa-mir-4295 ; hsa-mir-130b-3p ; hsa-mir-3666 ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-130a-3p ; hsa-mir-4713-5p ; hsa-mir-3156-3p ; hsa-mir-188-3p ; hsa-mir-6794-3p ; hsa-mir-6837-3p ; hsa-mir-2116-3p ; hsa-mir-532-3p ; hsa-mir-150-5p ; hsa-mir-205-5p ; hsa-mir-3162-3p ; hsa-mir-4301 ; hsa-mir-4639-3p ; hsa-mir-483-3p ; hsa-mir-3064-3p ; hsa-mir-5701 ; hsa-mir-668-3p ; hsa-mir-6890-3p ; hsa-mir-4773 ; hsa-mir-5582-3p ; hsa-mir-548f-3p ; hsa-mir-548e-3p ; hsa-mir-548az-3p ; hsa-mir-548ar-3p ; hsa-mir-548a-3p ; hsa-mir-7703 ; hsa-mir-6807-5p ; hsa-mir-4252 ; hsa-mir-4793-3p ; hsa-mir-4264 ; hsa-mir-1273g-3p ; hsa-mir-3934-5p ; hsa-mir-552-3p ; hsa-mir-7156-3p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-1304-3p ; hsa-mir-509-5p ; hsa-mir-509-3-5p ; hsa-mir-4418 ; hsa-mir-28-3p ; hsa-mir-3171 ; hsa-mir-34c-3p ; hsa-mir-513b-3p ; hsa-mir-548ac ; hsa-mir-548ae-3p ; hsa-mir-548ah-3p ; hsa-mir-548aj-3p ; hsa-mir-548am-3p ; hsa-mir-548aq-3p ; hsa-mir-548bb-3p ; hsa-mir-548d-3p ; hsa-mir-548h-3p ; hsa-mir-548j-3p ; hsa-mir-548x-3p ; hsa-mir-548z ; hsa-mir-576-3p

Nearest miRNA

hsa-mir-1180/Upstream/51442; hsa-mir-10226/Downstream/477490;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/10012, chr17-CpG: 193/Downstream/36029

Upstream sequence

ttaaaaacaacactgtgatgagccatccttatacatggattctttCTGGAATAAGAAATAAATGGACTGAAAAATTAGAATGTACAATTCTAGAGGTCCC

Downstream sequence

AATATCAGCCTTCTCTGTCTGTTCAGAGTCCCAATGCGAAGGCATCTGCTTAGCAGATAAATGTTTCAATATGCTGCACTGGAGCGCAACAACACTACAG