Basic Information
VIS ID
TVIS20001737
Fusion event
HPV-LINC00693 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
25581428
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
NC_001526.2
Host Sequence
Chromosome
chr3
Cytoband
p24.1
Reference genome
GRCh37/hg19
Start
28648164/28606673 (Hg38)
End
28648164/28606673 (Hg38)
Location type
Intronic
Target gene
LINC00693
Nearest miRNA
hsa-mir-12127/Upstream/2941734; hsa-let-7g/Downstream/2555031;
Nearest TSS
ENST00000440867/Upstream/30207; ENST00000636582/Downstream/229303;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/30194, chr3-CpG: 88/Downstream/1999822
Upstream sequence
cttttttttcttctttttttAAAACtgtgtccggaattggttccttctggtgagttcttggtcttgctaacttcaagaatgaagccacggacccttgcag
Downstream sequence
aacaactaatctaaagtaaatagaaatagttttaataatggaaaaactttaatgttctcagagtaaatagctttcatcctgaaaatagcaagagtttatg
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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