Basic Information
VIS ID
TVIS20001834
Fusion event
HPV-EDIL3 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
25581428
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
NC_001526.2
Host Sequence
Chromosome
chr5
Cytoband
q14.3
Reference genome
GRCh37/hg19
Start
83671787/84375969 (Hg38)
End
83671787/84375969 (Hg38)
Location type
Intronic
Target gene
EDIL3
miRNAs that regulate target gene
hsa-mir-21-5p ; hsa-mir-377-3p ; hsa-mir-676-5p ; hsa-mir-3691-3p ; hsa-mir-1228-3p ; hsa-mir-4698 ; hsa-mir-8063 ; hsa-mir-1264 ; hsa-mir-4668-5p ; hsa-mir-4328 ; hsa-mir-548t-3p ; hsa-mir-548ap-3p ; hsa-mir-548aa ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-7154-5p ; hsa-mir-8060
Nearest miRNA
hsa-mir-10397/Upstream/1535745; hsa-mir-103a-1/Downstream/2738910;
Nearest TSS
ENST00000502646/Upstream/194727; ENST00000507060/Downstream/8417;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/653430, chr5-CpG: 25/Downstream/6350
Upstream sequence
gagagagagagatacagagagagagagaATGACAATTTTTGCACCAGTTGAATGGTATACACAATATAAATAATTTTCTAGCATATGTTTCATAGATCAT
Downstream sequence
AGACATAATGTGTGTTTTACAAATAATAAAATCATTTAACAAAATATCTCCATGATATACAAGATGTGTCACTCACTGAGACAGagcatcgcctaatagt
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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