Basic Information
VIS ID
TVIS20001837
Fusion event
HPV-LOC102724637 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
25581428
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
NC_001526.2
Host Sequence
Chromosome
chr5
Cytoband
q14.3
Reference genome
GRCh37/hg19
Start
89216214/89920397 (Hg38)
End
89216214/89920397 (Hg38)
Location type
Intronic
Target gene
LOC102724637
Nearest miRNA
hsa-mir-10397/Upstream/1253458; hsa-mir-103a-1/Downstream/96224;
Nearest TSS
ENST00000502646/Upstream/19733; ENST00000512941/Downstream/24513;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/1030625, chr5-CpG: 17/Downstream/489129
Upstream sequence
gccagagatataaaaatgaaaaagatgtggaccctaccttcaagCCATTGAAAGTTGAAtttttttttttttttttcccaagatggagtctcgctctgtc
Downstream sequence
ctgaaacctaatactgagcgaacaacactaagtcctgaatacatatggtattaatccacttatggaaagttaaagacaacatgcaaaagcaagcaatata
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
Curate