Fusion event
HPV-LINC01411 integration
Quality evaluation
Normal
End
173938421/174511418 (Hg38)
Nearest miRNA
hsa-mir-10397/Upstream/1163882; hsa-mir-1229/Downstream/240316;
Upstream sequence
gagtgaccttgggcacgtcattttaacctctgtgtgcctcagtttcctcacctctaacaacaattgtacctacattactagcttactgtgaagaataaat
Downstream sequence
gtctgcaggccacatctagcctgtgggccaccaCTGTAGTTCATTTTGTAACACTTGACGGAATTTTTAACTACAGATTCATTGGATGGTTGACTTGCTT
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.