VISDB Viral Integration Site DataBase

VIS ID

TVIS20001864

Fusion event

HPV-KIF6 integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2015

PubMed ID

Virus name

HPV

Subtype

HPV16

Reference genome

Chromosome

chr6

Cytoband

p21.2

Reference genome

Start

End

39555545/39587769 (Hg38)

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-339-5p ; hsa-mir-125a-5p ; hsa-mir-6515-5p ; hsa-mir-6807-5p ; hsa-mir-4443 ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-8077 ; hsa-mir-496 ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-1233-3p ; hsa-mir-1225-3p ; hsa-mir-135b-5p ; hsa-mir-135a-5p ; hsa-mir-889-5p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-4776-3p ; hsa-mir-192-3p ; hsa-mir-661 ; hsa-mir-3116 ; hsa-mir-1254 ; hsa-mir-5189-3p ; hsa-mir-4772-5p ; hsa-mir-4748 ; hsa-mir-4464 ; hsa-mir-3591-3p ; hsa-mir-21-3p ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-4644 ; hsa-mir-4306 ; hsa-mir-185-5p ; hsa-mir-6501-3p ; hsa-mir-6715a-3p ; hsa-mir-6760-5p ; hsa-mir-4701-5p ; hsa-mir-5089-5p ; hsa-mir-5589-5p ; hsa-mir-6506-5p ; hsa-mir-4731-5p ; hsa-mir-619-5p ; hsa-mir-512-3p ; hsa-mir-4433b-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-6801-5p ; hsa-mir-6780b-5p ; hsa-mir-4725-3p ; hsa-mir-4271 ; hsa-mir-671-5p ; hsa-mir-4313 ; hsa-mir-345-3p ; hsa-mir-6798-5p ; hsa-mir-6718-5p ; hsa-mir-203b-5p ; hsa-mir-6783-5p ; hsa-mir-3943 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-7157-5p ; hsa-mir-4310 ; hsa-mir-186-5p ; hsa-mir-3133

Nearest miRNA

hsa-mir-1236/Upstream/513388; hsa-mir-10398/Downstream/2010954;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/273330, chr6-CpG: 34/Downstream/137198

Upstream sequence

tttgaaggccttgcaggcaagtgaggtgccttttactcttgtgtattctcttttcactcctcacacacaccacaattctggttctgatgatgctgtctgg

Downstream sequence

ttggcctcatctgctccctcctactTTTCTCctacaattacctcctctctcttctgaattaatttccctttcatctggacaattcccattctgcatgccc