Basic Information
VIS ID
TVIS20001892
Fusion event
HPV-LRRC72 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
25581428
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
NC_001526.2
Host Sequence
Chromosome
chr7
Cytoband
p21.1
Reference genome
GRCh37/hg19
Start
16570708/16531083 (Hg38)
End
16570708/16531083 (Hg38)
Location type
Intronic
Target gene
LRRC72
Nearest miRNA
hsa-mir-339/Upstream/9464038; hsa-mir-10399/Downstream/1596137;
Nearest TSS
ENST00000635602/Upstream/503; ENST00000430000/Downstream/63141;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/4034, chr7-CpG: 31/Downstream/55440
Upstream sequence
AGATGATTACTTGCTACCAGGAGTGAAGTTGGGTGTTCACATTTTGGATACATGTTCAAGGGATACCTATGCATTGGAGCAATCACTGGAGTTTGTCAGG
Downstream sequence
gaggcaggagaattgcttgaacctgggaggcagaggttgcagtgagctgaaatcacaccactgtactccagcctgggcaacagagcaaaactctctcaaa
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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