Basic Information
VIS ID
TVIS20001931
Fusion event
HPV-SLC20A2 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
Host Sequence
Chromosome
chr8
Cytoband
p11.21
Reference genome
End
42317064/42459546 (Hg38)
Location type
Intronic
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-124-1/Upstream/799038; hsa-mir-10400/Downstream/436651;
Upstream sequence
GATGAATGACGGCTGAGTATATAGAACTCAGATTCACACTCAAGATGTATAAGCTATTTGTTGGAGTTTGTTCATTGAGTGTTATCTTTGTGGAATAAAT
Downstream sequence
atcaggttctgaggctcagagaggctaagctatagtggcaacacagctgcgtaaatggcagagtggggatttaatttttttttctaacttgaaagtctgt
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
Curate