Basic Information
VIS ID
TVIS20001992
Fusion event
HPV-DMD integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
25581428
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
NC_001526.2
Host Sequence
Chromosome
chrX
Cytoband
p21.1
Reference genome
GRCh37/hg19
Start
33017893/32999776 (Hg38)
End
33017893/32999776 (Hg38)
Location type
Intronic
Target gene
DMD
miRNAs that regulate target gene
hsa-let-7b-5p ; hsa-mir-31-5p ; hsa-mir-155-5p ; hsa-mir-21-5p ; hsa-mir-16-5p ; hsa-mir-4446-5p ; hsa-mir-186-3p ; hsa-mir-561-3p ; hsa-mir-6499-3p ; hsa-mir-574-5p ; hsa-mir-4455 ; hsa-mir-5010-3p ; hsa-mir-2113 ; hsa-mir-147a ; hsa-mir-6818-5p ; hsa-mir-297 ; hsa-mir-19b-2-5p ; hsa-mir-19b-1-5p ; hsa-mir-19a-5p ; hsa-mir-2052 ; hsa-mir-8068 ; hsa-mir-6867-5p ; hsa-mir-223-5p ; hsa-mir-567 ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-3973 ; hsa-mir-511-3p ; hsa-mir-9-3p
Nearest miRNA
hsa-mir-23c/Upstream/358217; hsa-let-7f-2/Downstream/5024119;
Nearest TSS
ENST00000429181/Upstream/149974; ENST00000445233/Downstream/128389;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/1732874, chrX-CpG: 36/Downstream/726537
Nearest cancer related gene
DMD(TSG, No orient, 0)
Upstream sequence
agtgaccttctttgtctcttcttgtactttttgttttgaaatatgttttgtctgatataagtatagtgactcttgctctttattggtttccattggcata
Downstream sequence
aaaacaaaaacaaaaacaaaaacaaaaaacaaaaaaaaaacCGAAAAAACAAGAAATGTCTTCTGACCAATTTCTGTTTCTGGTCTGTGCATTTGACTTG
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
Curate