Basic Information
VIS ID
TVIS20001994
Fusion event
HPV-USP9X integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
Host Sequence
Chromosome
chrX
Cytoband
p11.4
Reference genome
End
41014715/41155462 (Hg38)
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-1587/Upstream/1317849; hsa-let-7f-2/Downstream/4590695;
Upstream sequence
TCAAAGAAAATGACACATACACAAAATGACTGACTTTAAATTTCTGGTATTTATTCAATATGGATAATATGAGAAAAAGTTGAATGTGTCCTCCCATAAC
Downstream sequence
atttaccattttttcttgtttctggatagagttggatgacccaacttcacTGTAGGTCAGATTTTTCCACTCTGTTTACTTAGGATGCTACCTTCTGTTA
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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