VISDB Viral Integration Site DataBase

VIS ID

TVIS20002244

Fusion event

HPV-DNAJB4 integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2015

PubMed ID

Virus name

HPV

Subtype

HPV16

Reference genome

Chromosome

chr1

Cytoband

p31.1

Reference genome

Start

End

78470618/78004934 (Hg38)

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-16-5p ; hsa-mir-148b-3p ; hsa-mir-142-3p ; hsa-mir-215-5p ; hsa-mir-148a-3p ; hsa-mir-192-5p ; hsa-mir-103a-3p ; hsa-mir-30a-5p ; hsa-mir-26b-5p ; hsa-mir-548n ; hsa-mir-1284 ; hsa-mir-3607-5p ; hsa-mir-4666a-5p ; hsa-mir-1206 ; hsa-mir-5089-5p ; hsa-mir-183-3p ; hsa-mir-5696 ; hsa-mir-877-5p ; hsa-mir-4524a-3p ; hsa-mir-15b-3p ; hsa-mir-4729 ; hsa-mir-3976 ; hsa-mir-6859-5p ; hsa-mir-3916 ; hsa-mir-3125 ; hsa-mir-4641 ; hsa-mir-7853-5p ; hsa-mir-105-5p ; hsa-mir-577 ; hsa-mir-7-2-3p ; hsa-mir-7-1-3p ; hsa-mir-365a-3p ; hsa-mir-365b-3p ; hsa-mir-3674 ; hsa-mir-135b-3p ; hsa-mir-7156-3p ; hsa-mir-6516-3p ; hsa-mir-1255b-5p ; hsa-mir-1255a ; hsa-mir-3121-5p ; hsa-mir-7845-5p ; hsa-mir-4802-3p ; hsa-mir-586 ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-6778-3p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-7107-5p ; hsa-mir-1234-3p ; hsa-mir-186-3p ; hsa-mir-1273g-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-6504-3p ; hsa-mir-512-3p ; hsa-mir-4438 ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-520a-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302c-3p ; hsa-mir-373-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-520b ; hsa-mir-520c-3p ; hsa-mir-520d-3p ; hsa-mir-520e ; hsa-mir-302d-3p ; hsa-mir-6878-3p ; hsa-mir-6744-3p ; hsa-mir-4757-5p ; hsa-mir-4312 ; hsa-mir-150-5p ; hsa-mir-212-5p ; hsa-mir-6747-3p ; hsa-mir-3973 ; hsa-mir-1289 ; hsa-mir-224-3p ; hsa-mir-31-3p ; hsa-mir-3198 ; hsa-mir-4294 ; hsa-mir-4309 ; hsa-mir-431-5p ; hsa-mir-4423-5p ; hsa-mir-4694-3p ; hsa-mir-4781-3p ; hsa-mir-522-3p ; hsa-mir-6501-5p ; hsa-mir-6514-5p ; hsa-mir-744-3p ; hsa-mir-924

Nearest miRNA

hsa-mir-101-1/Upstream/944732; hsa-mir-11399/Downstream/7128860;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/25337, chr1-CpG: 76/Downstream/40959

Nearest cancer related gene

DNAJB4(TSG, No orient, 0)

Upstream sequence

CCTCATGGTTTCCCACAGCTagaggccgctgctgtcctggcaagggcataggcctgggtataaggcaggcttgagtctgaagccaggctccactatttgc

Downstream sequence

cagcATAGAGGACCAAGAAGGAACAATGTCACTTGGTAAAACTGAAACTGGTGCTAACAGGGATCAACATAAATCAGGGTGATTCACAGTCTTCCCAGAA