Basic Information
VIS ID
TVIS20002273
Fusion event
HPV-LOC107984878 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
25581428
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
NC_001526.2
Host Sequence
Chromosome
chr16
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
77779488/77745591 (Hg38)
End
77779488/77745591 (Hg38)
Location type
Intronic
Target gene
LOC107984878
Nearest miRNA
hsa-mir-1225/Upstream/876572; hsa-mir-11401/Downstream/3639427;
Nearest TSS
ENST00000527434/Upstream/2591; ENST00000563850/Downstream/42939;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/22807, chr16-CpG: 65/Downstream/42887
Upstream sequence
gggtctaagtgagctaaaacaagctgcctacagacggctaaattaaaagagcacactgtaacacatgcccgctggagccttaggagctgtaaaacattca
Downstream sequence
agcggttaagagtgctgagtctggatgcctagctttgaacctcagctccagtgtcagcctattctgtgaccttgggcaagttattccttctctgtagatc
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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