Basic Information
VIS ID
TVIS20002274
Fusion event
HPV-GCGR integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
25581428
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
NC_001526.2
Host Sequence
Chromosome
chr17
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
79763267/81805391 (Hg38)
End
79763267/81805391 (Hg38)
Location type
Intronic
Target gene
GCGR
Nearest miRNA
hsa-mir-10226/Upstream/111522; hsa-mir-4525/Downstream/431277;
Nearest TSS
ENST00000595228/Upstream/304; ENST00000574283/Downstream/4397;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/460, chr17-CpG: 25/Downstream/5946
Upstream sequence
tccagaaccctgaacttgaccttcatccctgatctgcagctgtctcagctatccCCTCCAGCTCTACTCCGCCAGCCCCGGAGCCCCAGGGCAAGGGAAG
Downstream sequence
GCCCTGGTGGTGGCTGGTGTGGCCCGGCAGGCAGCTGTGGGAGGGAGGAAGGGGGTGGCATGCGGTGGGGGTCTAGAGAAGGCGGGCAGGGCACCTCGGG
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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