Basic Information
VIS ID
TVIS20002312
Fusion event
HPV-FBXO9 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
25581428
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
NC_001526.2
Host Sequence
Chromosome
chr6
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
52944309/53079511 (Hg38)
End
52944309/53079511 (Hg38)
Location type
Intronic
Target gene
FBXO9
miRNAs that regulate target gene
hsa-mir-192-3p ; hsa-mir-1277-5p ; hsa-mir-587 ; hsa-mir-5011-5p ; hsa-mir-190a-3p ; hsa-mir-4789-5p ; hsa-mir-3941 ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-5189-3p ; hsa-mir-4753-3p ; hsa-mir-130b-5p ; hsa-mir-1283 ; hsa-mir-6769b-3p ; hsa-mir-4723-3p ; hsa-mir-3183 ; hsa-mir-6800-3p ; hsa-mir-4753-5p ; hsa-mir-6768-3p ; hsa-mir-4729
Nearest miRNA
hsa-mir-10398/Upstream/930470; hsa-mir-10524/Downstream/197482;
Nearest TSS
ENST00000381078/Upstream/646; ENST00000473318/Downstream/11381;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/13551, chr6-CpG: 127/Downstream/268308
Upstream sequence
TTAAATTACAGAATCCAGTTAAACTAGAATTTGTCATGTGTCTTCCACCTCTCTACAACTGAGAACCATGAGGAAAATGATCCAGAACCAAGGATACTTT
Downstream sequence
TGAAGTAGCATTGGTTTTATATGGATAAAGATCAAGAAAACTTATTTTTAAGGCAATACTTTTGCAAGACAATTATAAAATTGTTTTGGCTTAATTGCAC
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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