Basic Information
VIS ID
TVIS20002397
Fusion event
HPV-XRCC6P5 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
25581428
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
NC_001526.2
Host Sequence
Chromosome
chrX
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
98780143/99525145 (Hg38)
End
98780143/99525145 (Hg38)
Location type
Intronic
Target gene
XRCC6P5
Nearest miRNA
hsa-let-7f-2/Upstream/4461919; hsa-mir-105-1/Downstream/7114669;
Nearest TSS
ENST00000429181/Upstream/951270; ENST00000485971/Downstream/771155;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/2839778, chrX-CpG: 23/Downstream/414191
Upstream sequence
gtcatctaactatatacttagatttttgcctgattgatctataaattattgacagtggattctaaagtttccaaatataatagtagttagaatgcaaatg
Downstream sequence
tatacctaacaaaccctaaatgctactccaaaagactcccacatctgataagtgaacccagtaaagtctcaggttataaaatcattgtacacaaatcagt
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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