Basic Information
VIS ID
TVIS20002416
Fusion event
HPV-chr1:q41 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
Host Sequence
Chromosome
chr1
Cytoband
q41
Reference genome
End
216635026/216461684 (Hg38)
Nearest miRNA
hsa-mir-101-1/Upstream/4383999; hsa-mir-1182/Downstream/3656169;
Nearby gene
LOC107985596(+8872) ;
Upstream sequence
GGAAGAGAGGTTCTTAGGGAGAAATGGAAAGCTATTGGAGGCTGTGGCCTTCAAAGGCTCAGGGACCTGGAGTGTCCCCATTCCAGCCCTCTGGTGTGGG
Downstream sequence
AATGGGGGCAAGGGATGCTAAGCCAAGCCAGCTCCATGTGAGTCCAGGAAGCAGGTGCCATAGTGGGTAGGAGGTGGAAGCAAAGAGGATCAGGGCCTCA
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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