Basic Information
VIS ID
TVIS20002418
Fusion event
HPV-chr1:q41 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
25581428
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
NC_001526.2
Host Sequence
Chromosome
chr1
Cytoband
q41
Reference genome
GRCh37/hg19
Start
216635258/216461916 (Hg38)
End
216635258/216461916 (Hg38)
Nearest miRNA
hsa-mir-101-1/Upstream/4384231; hsa-mir-1182/Downstream/3655937;
Nearest TSS
ENST00000473358/Upstream/38520; ENST00000470448/Downstream/253337;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/893993, chr1-CpG: 43/Downstream/139081
Nearby gene
LOC107985596(+8640) ;
Upstream sequence
gattctcagaaactcctttgtgatgtgtgcgttcaactcacagagtttaacctttcttttcatagagcagttaggaaacactctgtttgtaaagtctgca
Downstream sequence
agtggatattcagacctccttgaggccttcgttggaaacgggatttcttcatattctgctagacagaagAATTCNNNNNNNNNNNNNNNNNNNNNNNNNN
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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