VISDB Viral Integration Site DataBase

VIS ID

TVIS20002432

Fusion event

HPV-CCDC6 integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2015

PubMed ID

Virus name

HPV

Subtype

HPV16

Reference genome

Chromosome

chr10

Cytoband

q21.2

Reference genome

Start

End

61613348/59853590 (Hg38)

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-128-3p ; hsa-mir-181a-5p ; hsa-mir-331-5p ; hsa-mir-342-3p ; hsa-mir-99a-5p ; hsa-mir-92a-3p ; hsa-mir-548c-3p ; hsa-mir-671-5p ; hsa-mir-3190-3p ; hsa-mir-6079 ; hsa-mir-142-3p ; hsa-mir-146a-5p ; hsa-mir-146b-5p ; hsa-mir-580-5p ; hsa-mir-5572 ; hsa-mir-4260 ; hsa-mir-450a-2-3p ; hsa-mir-7156-5p ; hsa-mir-4273 ; hsa-mir-6803-5p ; hsa-mir-6751-5p ; hsa-mir-7109-5p ; hsa-mir-4665-5p ; hsa-mir-1275 ; hsa-mir-2117 ; hsa-mir-6740-5p ; hsa-mir-6745 ; hsa-mir-363-5p ; hsa-mir-608 ; hsa-mir-4651 ; hsa-mir-7110-5p ; hsa-mir-6842-5p ; hsa-mir-6752-5p ; hsa-mir-6835-5p ; hsa-mir-6828-5p ; hsa-mir-6077 ; hsa-mir-873-5p ; hsa-mir-7854-3p ; hsa-mir-4264 ; hsa-mir-4797-3p ; hsa-mir-4328 ; hsa-mir-6165 ; hsa-mir-2113 ; hsa-mir-630 ; hsa-mir-5093 ; hsa-mir-4790-3p ; hsa-mir-506-5p ; hsa-mir-892c-5p ; hsa-mir-3688-3p ; hsa-mir-1252-3p ; hsa-mir-3646 ; hsa-mir-5692a ; hsa-mir-218-5p ; hsa-mir-576-3p ; hsa-mir-6833-5p ; hsa-mir-6864-5p ; hsa-mir-6126 ; hsa-mir-3148 ; hsa-mir-6124 ; hsa-mir-1252-5p ; hsa-mir-299-3p ; hsa-mir-4657 ; hsa-mir-4491 ; hsa-mir-512-3p ; hsa-mir-708-5p ; hsa-mir-3139 ; hsa-mir-28-5p ; hsa-mir-28-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-708-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-335-3p ; hsa-mir-4652-3p ; hsa-mir-1298-5p ; hsa-mir-4778-5p ; hsa-mir-8087 ; hsa-mir-130b-3p

Nearest miRNA

hsa-mir-1265/Upstream/2549031; hsa-mir-107/Downstream/3519367;

Nearest TSS

Nearest CpG islands

None/Target, chr10-CpG: 68/Upstream/143349, chr10-CpG: 22/Downstream/28479

Nearest cancer related gene

CCDC6(OG, No orient, 0)

Upstream sequence

cttttgctgatctaagcattaaagagtgggctcgcttactgttgagttttactgacataataaataagcttcaagttagtccaatgttatcacttatcct

Downstream sequence

ttagtaaacattgccttccacatggaagttaattcagagaactcccagtaacacacttggctcccaacagtgaactcagctacatgcattcatttagaga