Basic Information
VIS ID
TVIS20002467
Fusion event
HPV-LOC105369890 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
25581428
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
NC_001526.2
Host Sequence
Chromosome
chr12
Cytoband
q21.33
Reference genome
GRCh37/hg19
Start
90351844/89958067 (Hg38)
End
90351844/89958067 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA12B
Target gene
LOC105369890
Nearest miRNA
hsa-let-7i/Upstream/3212918; hsa-mir-1178/Downstream/4603722;
Nearest TSS
ENST00000382841/Upstream/10374; ENST00000548722/Downstream/149672;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/247779, chr12-CpG: 30/Downstream/995960
Upstream sequence
ATCACATACCAAATTTAGCATAATTTCATAATAATATGATATTTGTTCAGAGTGTACAATGTTGAACAAAACATAGAGCTCGGAAACTTATATTGATGTC
Downstream sequence
ATTATATGGATACACCAACTAGTgcgggaaaagaaaactattccacaaatggcactgggaaaattgctgttttattttgggagatggggcagaaattttt
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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