VISDB Viral Integration Site DataBase

VIS ID

TVIS20002527

Fusion event

HPV-ZNF708 integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2015

PubMed ID

Virus name

HPV

Subtype

HPV16

Reference genome

Chromosome

chr19

Cytoband

p12

Reference genome

Start

End

21498142/21315340 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-18a-5p ; hsa-mir-222-3p ; hsa-mir-4504 ; hsa-mir-549a ; hsa-mir-3927-5p ; hsa-mir-5089-5p ; hsa-mir-6811-5p ; hsa-mir-6511b-5p ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-15b-3p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-4698 ; hsa-mir-150-5p ; hsa-mir-186-3p ; hsa-mir-6869-5p ; hsa-mir-4502 ; hsa-mir-3921 ; hsa-mir-4653-5p ; hsa-mir-301b-5p ; hsa-mir-301a-5p ; hsa-mir-146a-3p ; hsa-mir-6817-3p ; hsa-mir-576-3p ; hsa-mir-4662b ; hsa-mir-4647 ; hsa-mir-4426 ; hsa-mir-1303 ; hsa-mir-5096 ; hsa-mir-197-3p ; hsa-mir-411-5p ; hsa-mir-6832-5p ; hsa-mir-193b-5p ; hsa-mir-5580-5p ; hsa-mir-3190-5p ; hsa-mir-483-5p ; hsa-mir-640 ; hsa-mir-203b-3p ; hsa-mir-7158-3p ; hsa-mir-378a-5p ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-4680-5p ; hsa-mir-1224-3p ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-6079 ; hsa-mir-7977 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-3202 ; hsa-mir-4533 ; hsa-mir-4493 ; hsa-mir-5693 ; hsa-mir-383-3p ; hsa-mir-1273f ; hsa-mir-6818-3p ; hsa-mir-2110 ; hsa-mir-4684-5p ; hsa-mir-491-5p ; hsa-mir-593-3p ; hsa-mir-6895-3p ; hsa-mir-6780b-5p ; hsa-mir-4725-3p ; hsa-mir-4271 ; hsa-mir-5699-3p ; hsa-mir-4421 ; hsa-mir-339-5p ; hsa-mir-10b-5p ; hsa-mir-10a-5p ; hsa-mir-6732-3p ; hsa-mir-548c-3p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-6769b-5p ; hsa-mir-6769a-5p ; hsa-mir-6756-5p ; hsa-mir-6766-5p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-3656 ; hsa-mir-6087 ; hsa-mir-6765-3p ; hsa-mir-3622b-3p ; hsa-mir-3622a-3p ; hsa-mir-1289 ; hsa-mir-129-5p ; hsa-mir-1304-3p ; hsa-mir-143-3p ; hsa-mir-1910-3p ; hsa-mir-2682-5p ; hsa-mir-3198 ; hsa-mir-34b-5p ; hsa-mir-4294 ; hsa-mir-4309 ; hsa-mir-4423-5p ; hsa-mir-449c-5p ; hsa-mir-4534 ; hsa-mir-4639-3p ; hsa-mir-4708-5p ; hsa-mir-4770 ; hsa-mir-6088 ; hsa-mir-6501-5p ; hsa-mir-6511a-5p ; hsa-mir-6514-5p ; hsa-mir-6794-3p ; hsa-mir-6808-5p ; hsa-mir-6893-5p ; hsa-mir-744-3p ; hsa-mir-802 ; hsa-mir-8055 ; hsa-mir-8082 ; hsa-mir-940

Nearest miRNA

hsa-mir-10395/Upstream/915986; hsa-let-7e/Downstream/13807360;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/232713, chr19-CpG: 18/Downstream/148186

Upstream sequence

TTTCCtccctgctttttattatggaaattctcaaaaatgcacaaaagtagacagaataatgtatacccaCTGTGAAAGCAttcagctatcttctcctttt

Downstream sequence

CAAAGTCTGGCCCTGTCTTGTAATCCCAGGCAGAAGCCAGATCTTATGTGCAGATTCTAAGTGGGATCAACCTGACTCTGCATCCTTAGGTGTTACAGAA