Basic Information
VIS ID
TVIS20002528
Fusion event
HPV-EID2 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
25581428
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
NC_001526.2
Host Sequence
Chromosome
chr19
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
40029912/39539272 (Hg38)
End
40029912/39539272 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA19A
Target gene
EID2
miRNAs that regulate target gene
hsa-mir-6826-3p ; hsa-mir-550a-3p ; hsa-mir-200c-5p ; hsa-mir-1914-5p ; hsa-mir-6795-3p ; hsa-mir-6760-3p ; hsa-mir-4446-5p
Nearest miRNA
hsa-mir-10395/Upstream/129594; hsa-let-7e/Downstream/290444;
Nearest TSS
ENST00000633603/Upstream/6418; ENST00000600141/Downstream/1061;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/6245, chr19-CpG: 90/Downstream/214
Upstream sequence
gattacagacacctgccaccacacctggctaatttttgtatttttaatagagacggagtttcaccatgttggccaggatcgtctcgatctcttgacctcg
Downstream sequence
GTCTTATCGCGATATACTCTTGACTTCTGAAAATCAAGTTGCAGGATTGGTATGACTGGAATGCAGAGGTTCTCTTGAAGTAGTGTCACCACATAACTAT
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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