Basic Information
VIS ID
TVIS20002545
Fusion event
HPV-PLCB4 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
25581428
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
NC_001526.2
Host Sequence
Chromosome
chr20
Cytoband
p12.2
Reference genome
GRCh37/hg19
Start
9202444/9221797 (Hg38)
End
9202444/9221797 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA20B
Target gene
PLCB4
miRNAs that regulate target gene
hsa-mir-9-5p ; hsa-mir-26b-5p ; hsa-mir-412-3p ; hsa-mir-371a-3p
Nearest miRNA
hsa-mir-103a-2/Upstream/1850105; hsa-mir-1-1/Downstream/1427839;
Nearest TSS
ENST00000382410/Upstream/4407; ENST00000414679/Downstream/86003;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/152426, chr20-CpG: 32/Downstream/284667
Upstream sequence
atattgattcttcctatccataagcatggaatgtttttctttttgtttgtgtcctctctgatttccttaagtagtggtttgtagttttccttgaagaagt
Downstream sequence
GTGCCCTGAAAGAAGAGGTGAGGATGTCATGTGATTGTATGATTGGAGATTATTCTTACTAGGAACATTTCCAGGCACACAGGTTAACTTCATTATTCTT
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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