Basic Information
VIS ID
TVIS20002580
Fusion event
HPV-LINC00578 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
25581428
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
NC_001526.2
Host Sequence
Chromosome
chr3
Cytoband
q26.32
Reference genome
GRCh37/hg19
Start
177241922/177524134 (Hg38)
End
177241922/177524134 (Hg38)
Location type
Intronic
Target gene
LINC00578
Nearest miRNA
hsa-let-7g/Upstream/1008983; hsa-mir-1224/Downstream/6362666;
Nearest TSS
ENST00000440867/Upstream/82170; ENST00000423466/Downstream/93456;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/326068, chr3-CpG: 63/Downstream/1547383
Upstream sequence
CACTCATCTATTCTAGGTTTGACTTGAGTCTTCAAAGAGAAATGGTCTGATTAGCCTTATAACCATGGCAGTGGTTGGGCACTCCAGAGAATGCCCCAGA
Downstream sequence
CTCCCACACTCATATACTGTAGCATTTTGTTCATACATATGCTTCCTCTCACATGGTCAAATGGTTAGTTTTTTATCTGTTTGACTGCCAAGCAGTGGAC
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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