Basic Information
VIS ID
TVIS20002642
Fusion event
HPV-LINC00222 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
25581428
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
NC_001526.2
Host Sequence
Chromosome
chr6
Cytoband
q21
Reference genome
GRCh37/hg19
Start
109075580/108754377 (Hg38)
End
109075580/108754377 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA6F
Target gene
LINC00222
Nearest miRNA
hsa-mir-10398/Upstream/1970157; hsa-mir-1202/Downstream/10314670;
Nearest TSS
ENST00000381078/Upstream/2559; ENST00000430898/Downstream/4784;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/90569, chr6-CpG: 62/Downstream/93888
Upstream sequence
gcttctaccaagacaccattctctggtttgctgaatgccttattctatgttatgtatcccatctattattgcttctgatcaaagaatttattttacaata
Downstream sequence
TTTTTATGCTTGCTGCCAACCACCATGCCTTTGATCAAGGAATGAATCCACTGCTTTACAGAGATTTCCATTTCCCAATCCTCTCCTTTCCTAATCAAAT
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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