Basic Information
VIS ID
TVIS20002653
Fusion event
HPV-ICA1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
25581428
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
NC_001526.2
Host Sequence
Chromosome
chr7
Cytoband
p21.3
Reference genome
GRCh37/hg19
Start
8237448/8197818 (Hg38)
End
8237448/8197818 (Hg38)
Location type
Intronic
Target gene
ICA1
Nearest miRNA
hsa-mir-339/Upstream/1130773; hsa-mir-10399/Downstream/9929402;
Nearest TSS
ENST00000635602/Upstream/40054; ENST00000458624/Downstream/20641;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/227954, chr7-CpG: 118/Downstream/63583
Upstream sequence
actctttttgtggaatttgcaagtggagatttcaagcgatttgatgccaacagtagaaaaggaaatatctgcaaataaaaacaagacagaatcattctca
Downstream sequence
tggcaatggaaaaaacctaaaaactacctggttaattcagaactctcaaagttttatgaactgatggtttggatacctttggaagtggaagtgaTAGGAT
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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