Basic Information
VIS ID
TVIS20002655
Fusion event
HPV-LOC105375158 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
Host Sequence
Chromosome
chr7
Cytoband
p21.3
Reference genome
End
13004583/12964958 (Hg38)
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-339/Upstream/5897913; hsa-mir-10399/Downstream/5162262;
Upstream sequence
agataaaaATAAAGAAATGATAAAAAAAAAGCGTAGCAGCCTTTCAAACGGAGTTAGAACAAAGAGATTGGAATAGAAAGGAGAAAGCAGCATTTTAATA
Downstream sequence
agggaaaacagtggataatttggagtagagaaagtacatgatgtgacttgtattttaaatgggtcctctggttgctctgttgaTTAGAGCTGTGAATCAT
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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