Basic Information
VIS ID
TVIS20002682
Fusion event
HPV-LOC105375928 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
Host Sequence
Chromosome
chr8
Cytoband
q21.13
Reference genome
End
82754733/81842498 (Hg38)
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-12123/Upstream/1601025; hsa-mir-10400/Downstream/9362987;
Upstream sequence
ATTCGTAAtttttatttatttatttttctgagacagagtcttgctctgttgcccaggctggagtgcagtggtgtgatctcggttcactgcaacctctgtc
Downstream sequence
agagagagagagagagagagagagagaaagagaaagaaaacgagcgagggagagagcgagagcgagagagagagagagagagCGTCACACACACATCTCT
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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