Basic Information
VIS ID
TVIS20002787
Fusion event
HPV-chr2:p16.2 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Squamous-cell carcinoma (SCC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25581428
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
NC_001526.2
Host Sequence
Chromosome
chr2
Cytoband
p16.2
Reference genome
GRCh37/hg19
Start
53655144/53428006 (Hg38)
End
53655144/53428006 (Hg38)
Fragile sites / regions
FRA2S ; FRA2D ; FRA2H
Nearest miRNA
hsa-mir-1301/Upstream/725391; hsa-mir-10b/Downstream/421116;
Nearest TSS
ENST00000437798/Upstream/517986; ENST00000295304/Downstream/178072;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/798020, chr2-CpG: 28/Downstream/339748
Upstream sequence
cacacagagtttattgcagtttttttttcttttAAACAAAGATACCCAAGATAAGAGGTAGGAagagagagagagagagaggagagagagagagaggaga
Downstream sequence
atttccagctactcgggaggctgaggcggaaatatcacgtaagtccaggaggttgaggctgcagtgaactatgatcatgtcactgtactccagcctgggc
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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