VISDB Viral Integration Site DataBase

VIS ID

TVIS20002788

Fusion event

HPV-WDR92 integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Squamous-cell carcinoma (SCC)

Quality evaluation

Normal

Reported year

2015

PubMed ID

Virus name

HPV

Subtype

HPV16

Reference genome

Chromosome

chr2

Cytoband

p14

Reference genome

Start

End

68363654/68136522 (Hg38)

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-1277-5p ; hsa-mir-190a-3p ; hsa-mir-5011-5p ; hsa-mir-7151-3p ; hsa-mir-6807-5p ; hsa-mir-5095 ; hsa-mir-6849-3p ; hsa-mir-4433a-3p ; hsa-mir-6504-3p ; hsa-mir-4433b-3p ; hsa-mir-4700-3p ; hsa-mir-129-5p ; hsa-mir-8055 ; hsa-mir-498 ; hsa-mir-4465 ; hsa-mir-26b-5p ; hsa-mir-26a-5p ; hsa-mir-1297 ; hsa-mir-1264 ; hsa-mir-8070 ; hsa-mir-6778-3p ; hsa-mir-4679 ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-150-5p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-6814-5p ; hsa-mir-5697 ; hsa-mir-562 ; hsa-mir-4762-3p ; hsa-mir-6843-3p ; hsa-mir-6848-3p ; hsa-mir-640 ; hsa-mir-3192-3p ; hsa-mir-378a-5p ; hsa-mir-1193 ; hsa-mir-6759-3p ; hsa-mir-3151-3p ; hsa-mir-1237-3p ; hsa-mir-2392 ; hsa-mir-4662a-5p ; hsa-mir-575 ; hsa-mir-4676-5p ; hsa-mir-6858-3p ; hsa-mir-4284 ; hsa-mir-4772-3p ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-1304-3p ; hsa-mir-6741-3p ; hsa-mir-1281 ; hsa-mir-4485-5p ; hsa-mir-4532 ; hsa-mir-1247-3p ; hsa-mir-6890-3p ; hsa-mir-122-3p ; hsa-mir-106a-5p ; hsa-mir-106b-5p ; hsa-mir-17-5p ; hsa-mir-186-3p ; hsa-mir-20a-5p ; hsa-mir-20b-5p ; hsa-mir-302a-3p ; hsa-mir-302b-3p ; hsa-mir-302c-3p ; hsa-mir-302d-3p ; hsa-mir-302e ; hsa-mir-372-3p ; hsa-mir-373-3p ; hsa-mir-4731-5p ; hsa-mir-5089-5p ; hsa-mir-512-3p ; hsa-mir-519d-3p ; hsa-mir-520a-3p ; hsa-mir-520b ; hsa-mir-520c-3p ; hsa-mir-520d-3p ; hsa-mir-520e ; hsa-mir-520g-3p ; hsa-mir-520h ; hsa-mir-526b-3p ; hsa-mir-5589-5p ; hsa-mir-619-5p ; hsa-mir-6506-5p ; hsa-mir-93-5p

Nearest miRNA

hsa-mir-1301/Upstream/1778194; hsa-mir-10b/Downstream/967160;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/738810, chr2-CpG: 70/Downstream/20530

Upstream sequence

ATTTTATTTCCATTCTTTTATTTAAATTATTTAGTGGGTGTTCAATAATTCTGGCTAGAAAGACAAAATATGTTCTTGCTTTATGACACAAGTGTTAGCA

Downstream sequence

GCAACGGAGTAAGTTCTCACTtcctgagcaacttgtatattttaatcttatggaaacaaggaatctgtaactgatctttctttctttttatacttgagga