VISDB Viral Integration Site DataBase

VIS ID

TVIS20002789

Fusion event

HPV-CNNM4 integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Squamous-cell carcinoma (SCC)

Quality evaluation

Normal

Reported year

2015

PubMed ID

Virus name

HPV

Subtype

HPV16

Reference genome

Chromosome

chr2

Cytoband

q11.2

Reference genome

Start

End

97437495/96771758 (Hg38)

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-98-5p ; hsa-mir-377-5p ; hsa-mir-3148 ; hsa-mir-3202 ; hsa-mir-4257 ; hsa-mir-4476 ; hsa-mir-4668-5p ; hsa-mir-5584-5p ; hsa-mir-6086 ; hsa-mir-6876-5p ; hsa-mir-7515 ; hsa-mir-876-3p ; hsa-mir-6508-3p ; hsa-mir-323a-5p ; hsa-mir-4726-5p ; hsa-mir-4640-5p ; hsa-mir-765 ; hsa-mir-6077 ; hsa-mir-4646-5p ; hsa-mir-7113-5p ; hsa-mir-6895-5p ; hsa-mir-9500 ; hsa-mir-4779 ; hsa-mir-575 ; hsa-mir-4676-5p ; hsa-mir-769-3p ; hsa-mir-450b-3p ; hsa-mir-4314 ; hsa-mir-1260b ; hsa-mir-1260a ; hsa-mir-638 ; hsa-mir-8085 ; hsa-mir-4713-3p ; hsa-mir-6731-5p ; hsa-mir-760 ; hsa-mir-766-5p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-3192-5p ; hsa-mir-204-3p ; hsa-mir-330-5p ; hsa-mir-326 ; hsa-mir-1203 ; hsa-mir-1224-3p ; hsa-mir-1306-5p ; hsa-mir-6760-5p ; hsa-mir-4325 ; hsa-mir-7703 ; hsa-mir-203a-3p ; hsa-mir-3914 ; hsa-mir-32-5p ; hsa-mir-92b-3p ; hsa-mir-25-3p ; hsa-mir-367-3p ; hsa-mir-92a-3p ; hsa-mir-363-3p ; hsa-mir-6748-5p ; hsa-mir-3190-3p ; hsa-mir-654-5p ; hsa-mir-541-3p ; hsa-mir-4483 ; hsa-mir-1293 ; hsa-mir-6756-5p ; hsa-mir-6766-5p ; hsa-mir-6745 ; hsa-mir-363-5p ; hsa-mir-7-5p ; hsa-mir-194-3p ; hsa-mir-3681-3p ; hsa-mir-216a-3p ; hsa-mir-128-3p ; hsa-mir-6881-3p ; hsa-mir-6780a-3p ; hsa-mir-7111-3p ; hsa-mir-3667-3p ; hsa-mir-877-3p ; hsa-mir-1247-3p

Nearest miRNA

hsa-mir-1285-2/Upstream/7959304; hsa-mir-10b/Downstream/26520;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/10287, chr2-CpG: 230/Downstream/43861

Upstream sequence

ctagttaacgtatgcattaaacctgaaatttatctgtagagacaatgcaatttcaactgaaattctagctgaattttttttggtagaaattgacaaaccg

Downstream sequence

GGAACACAGTTTAGATGGGTTCTTCAGATTCCCTGCTGATAAGAAATTAAATCCTTATCCCCATCATCCTTTCGGAGTCTCTCAGAGAATCTGCACCAGG