Fusion event
HPV-chr2:q21.2 integration
Disease
Squamous-cell carcinoma (SCC)
Quality evaluation
Normal
End
133052987/132295414 (Hg38)
Nearest miRNA
hsa-mir-1285-2/Upstream/38334; hsa-mir-10b/Downstream/138297;
Upstream sequence
CATTTGTGACTTCAAGAAATAGGAAGGAAAATGGAATAAAGAATGACTTGAAAGCCACTGAGCCTTGAAGACTTGTTTCCCTTATTAGTTTCCCTTATTA
Downstream sequence
gtatcccaactccagcaataccttgtcctgagggaaacttcaattcataaacccatgaatttctatgactttatcacacatctcatgttcccattttttt
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.