Basic Information
VIS ID
TVIS20002790
Fusion event
HPV-chr2:q21.2 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Squamous-cell carcinoma (SCC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
Host Sequence
Chromosome
chr2
Cytoband
q21.2
Reference genome
End
133052987/132295414 (Hg38)
Fragile sites / regions
Nearest miRNA
hsa-mir-1285-2/Upstream/38334; hsa-mir-10b/Downstream/138297;
Nearby gene
ZNF806(+9378) ;
Upstream sequence
CATTTGTGACTTCAAGAAATAGGAAGGAAAATGGAATAAAGAATGACTTGAAAGCCACTGAGCCTTGAAGACTTGTTTCCCTTATTAGTTTCCCTTATTA
Downstream sequence
gtatcccaactccagcaataccttgtcctgagggaaacttcaattcataaacccatgaatttctatgactttatcacacatctcatgttcccattttttt
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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