Basic Information
VIS ID
TVIS20002791
Fusion event
HPV-CCDC148 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Squamous-cell carcinoma (SCC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25581428
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
NC_001526.2
Host Sequence
Chromosome
chr2
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
159299545/158443033 (Hg38)
End
159299545/158443033 (Hg38)
Location type
Intronic
Target gene
CCDC148
Nearest miRNA
hsa-mir-128-1/Upstream/7074622; hsa-mir-10b/Downstream/743802;
Nearest TSS
ENST00000437798/Upstream/62073; ENST00000479398/Downstream/13533;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/566200, chr2-CpG: 169/Downstream/13627
Upstream sequence
ctttcctaagcagacagttgtatcatctgcTCTTCTTTTCTAATTGCTTCTGATATGTGCATCTGTGTTTACTGGTGAGCTTGTGCTCTAGGGTTCTTTT
Downstream sequence
TtttgtttgtttgtttgtttgtttgtttTTTAATAAACAGCTGCTCCCTTGTTAAGGTAGGGGTAAGGTCCTAGAGTTAGGGACAGGAAGGCAAGATATA
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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