VISDB Viral Integration Site DataBase

VIS ID

TVIS20002837

Fusion event

HPV-MAPK14 integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Squamous-cell carcinoma (SCC)

Quality evaluation

Normal

Reported year

2015

PubMed ID

Virus name

HPV

Subtype

HPV16

Reference genome

Chromosome

chr6

Cytoband

p21.31

Reference genome

Start

End

36071084/36103307 (Hg38)

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-24-3p ; hsa-mir-199a-3p ; hsa-mir-200a-3p ; hsa-mir-141-3p ; hsa-mir-125b-5p ; hsa-mir-214-3p ; hsa-mir-155-5p ; hsa-mir-17-5p ; hsa-mir-106a-5p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-518a-5p ; hsa-mir-527 ; hsa-mir-128-3p ; hsa-mir-3152-5p ; hsa-mir-4774-3p ; hsa-mir-6836-3p ; hsa-mir-585-5p ; hsa-mir-668-3p ; hsa-mir-6781-3p ; hsa-mir-2682-3p ; hsa-mir-215-3p ; hsa-mir-3137 ; hsa-mir-6773-3p ; hsa-mir-1208 ; hsa-mir-6760-3p ; hsa-mir-1183 ; hsa-mir-548e-5p ; hsa-mir-6820-3p ; hsa-mir-3164 ; hsa-mir-6757-3p ; hsa-mir-4454 ; hsa-mir-4680-5p ; hsa-mir-7107-5p ; hsa-mir-1234-3p ; hsa-mir-186-3p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-548aw ; hsa-mir-4719 ; hsa-mir-4762-5p ; hsa-mir-34b-3p ; hsa-mir-129-5p ; hsa-mir-8055 ; hsa-mir-744-3p ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-6867-3p ; hsa-mir-664b-3p ; hsa-mir-579-3p ; hsa-mir-4423-5p ; hsa-mir-4294 ; hsa-mir-6501-5p ; hsa-mir-367-5p ; hsa-mir-1267 ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-7113-3p ; hsa-mir-4469 ; hsa-mir-153-5p ; hsa-mir-1250-3p ; hsa-mir-335-3p ; hsa-mir-642a-5p ; hsa-mir-5696 ; hsa-mir-2276-5p ; hsa-mir-6892-3p ; hsa-mir-629-3p ; hsa-mir-4715-3p ; hsa-mir-3064-3p ; hsa-mir-4279 ; hsa-mir-513b-5p ; hsa-mir-4252 ; hsa-mir-205-5p ; hsa-mir-181a-2-3p ; hsa-mir-4482-3p ; hsa-mir-7159-3p ; hsa-mir-4775 ; hsa-mir-6831-3p ; hsa-mir-643 ; hsa-mir-4735-5p ; hsa-mir-590-3p ; hsa-mir-27a-3p ; hsa-mir-125a-5p ; hsa-mir-4524a-3p ; hsa-mir-4524b-3p ; hsa-mir-4712-3p ; hsa-mir-6759-3p

Nearest miRNA

hsa-mir-1236/Upstream/438518; hsa-mir-10398/Downstream/519129;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/74712, chr6-CpG: 72/Downstream/26955

Upstream sequence

GGTTCTTCTCTCAAAGTCTACTACTGTTACCATTTTGATATGTTTTCTTCCAGAGGTTTACTCTGCCAGTTAATTAGAATGTAATTGTAATCATATAGTT

Downstream sequence

GTTGCTTTATTATTAttatttatttatttatttatttatttatttTGGTAGTGTcagggtctcgctcttttacccaggctagagtacagtggcacaatca