Basic Information
VIS ID
TVIS20003040
Fusion event
HPV-RAB27B integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
25581428
Virus Sequence
Virus name
HPV
Reference genome
NC_001526.2;HQ537777.1
Host Sequence
Chromosome
chr18
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
52525529/54858298 (Hg38)
End
52525529/54858298 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA18B
Target gene
RAB27B
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-mir-30a-5p ; hsa-mir-1-3p ; hsa-mir-193a-3p
Nearest miRNA
hsa-mir-1-2/Upstream/1621108; hsa-mir-122/Downstream/620923;
Nearest TSS
ENST00000575820/Upstream/29817; ENST00000590604/Downstream/21159;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/29522, chr18-CpG: 39/Downstream/100988
Upstream sequence
acattcagatactacaaaaagagtgtttcaaacctgctcgatgaaagggaatgttcaactctgtgacttgaatgcagacatcacaaagcagtttctgaga
Downstream sequence
CATTTAGTTTTCATAATTATGCCTTTTGTTGTAAGAATAACACCTACCAAAATGGGCTCAGCTTCCAGCAGGAAAACTGttttttttttttttttttttt
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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