Basic Information
VIS ID
TVIS20003070
Fusion event
HPV-MAML3 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
25581428
Virus Sequence
Virus name
HPV
Reference genome
NC_001526.2;EU918767.1
Host Sequence
Chromosome
chr4
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
140820784/139899630 (Hg38)
End
140820784/139899630 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA4C
Target gene
MAML3
miRNAs that regulate target gene
hsa-mir-3682-3p ; hsa-mir-4424 ; hsa-mir-4679 ; hsa-mir-1273g-3p ; hsa-mir-1272 ; hsa-mir-1255b-2-3p ; hsa-mir-4477b ; hsa-mir-5684 ; hsa-mir-651-3p ; hsa-mir-548c-3p ; hsa-mir-452-3p ; hsa-mir-576-3p ; hsa-mir-539-3p ; hsa-mir-485-3p ; hsa-mir-101-3p ; hsa-mir-144-3p ; hsa-mir-499a-3p ; hsa-mir-499b-3p ; hsa-mir-505-3p ; hsa-mir-5696 ; hsa-mir-579-3p ; hsa-mir-664b-3p
Nearest miRNA
hsa-mir-12113/Upstream/14392323; hsa-mir-1305/Downstream/3443830;
Nearest TSS
ENST00000502981/Upstream/9578; ENST00000509184/Downstream/228385;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/39351, chr4-CpG: 20/Downstream/250739
Upstream sequence
GAAATGACCATGATCTTTTTTCTTTCTGCTATGGTTCACATTTAAAACTCTATTCCCAAAAAGTCTTGGAAGTACATAAGGCTGATGGTGCCTCTTTTCA
Downstream sequence
GAGATCTATGTGCAGGGCAGACTAACAGGAAAAGAAAAAGAAAAATCTTATTACAACTCCCGAAGCCTCCCTTGGTAATCTTATAGACTCCTAACATTAC
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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