Basic Information
VIS ID
TVIS20003092
Fusion event
HPV-chr1:q31.2 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
25581428
Virus Sequence
Virus name
HPV
Reference genome
NC_001526.2;HQ537687.1
Host Sequence
Chromosome
chr1
Cytoband
q31.2
Reference genome
GRCh37/hg19
Start
192547227/192578097 (Hg38)
End
192547227/192578097 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA1K
Target gene
LOC105371664 ; RGS1
miRNAs that regulate target gene
hsa-mir-374a-5p
Nearest miRNA
hsa-mir-101-1/Upstream/12139707; hsa-mir-1182/Downstream/138231;
Nearest TSS
ENST00000473358/Upstream/2322; ENST00000482095/Downstream/50988;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/5897148, chr1-CpG: 56/Downstream/230405
Upstream sequence
TAGTTTTTATTGATGGCTTATTCCTATTATCTTTTTAGTAGAAAATTGTTTTCTCAGAATGTCCAGGACAGGAGCTGTTTGAATTAATCATGTTTGGTAT
Downstream sequence
TTAAATATCTCAGCTCCAAAAAGACACAATATCAAAAAATAAACTTGATTCTATTCAGCCCCAGAATCTTCTTTGTGCatttttaaaaaaaaagtaaaaa
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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