Basic Information
VIS ID
TVIS20003202
Fusion event
HPV-EPHA6 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
25581428
Virus Sequence
Virus name
HPV
Reference genome
NC_001526.2;AY262282.1;HQ537687.1;HQ537751.1
Host Sequence
Chromosome
chr3
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
96717515/96998671 (Hg38)
End
96717515/96998671 (Hg38)
Location type
Intronic
Target gene
EPHA6
miRNAs that regulate target gene
hsa-mir-18a-3p ; hsa-mir-216b-5p ; hsa-mir-3675-3p ; hsa-mir-4290 ; hsa-mir-4667-3p ; hsa-mir-4691-5p ; hsa-mir-4762-5p ; hsa-mir-5193 ; hsa-mir-519d-5p ; hsa-mir-520f-5p ; hsa-mir-6779-3p ; hsa-mir-6792-3p
Nearest miRNA
hsa-let-7g/Upstream/638632; hsa-mir-12124/Downstream/2965643;
Nearest TSS
ENST00000440867/Upstream/183880; ENST00000503760/Downstream/440939;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/183890, chr3-CpG: 38/Downstream/765625
Upstream sequence
TTTTCACATATCCAAAAAACATGCTCTCCATTTAGACATCTTTAAACAAGTATTTCAGTAGCATCGCCTGGTAGAATAGGATCAGACAGACCTAGCTACG
Downstream sequence
ttagttatatctgatgtgtctgggtgtggatttatttttttcctgctttTCATTCTGTGTTTTTAACCTgagaaagagagagacagagaaagagagagag
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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