Basic Information
VIS ID
TVIS20003328
Fusion event
HPV-chr1:p31.1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
25581428
Virus Sequence
Virus name
HPV
Reference genome
HE574705.1;NC_001526.2;AY262282.1;HQ537777.1;EU918767.1
Host Sequence
Chromosome
chr1
Cytoband
p31.1
Reference genome
GRCh37/hg19
Start
84303466/83837783 (Hg38)
End
84303466/83837783 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA1L
Target gene
LINC01725 ; LOC101927560
Nearest miRNA
hsa-mir-101-1/Upstream/6777581; hsa-mir-11399/Downstream/1296011;
Nearest TSS
ENST00000473358/Upstream/47503; ENST00000646678/Downstream/22763;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/2034420, chr1-CpG: 50/Downstream/22801
Upstream sequence
cacagttccataggactgggaaaggcccaggaaacttacaattatggtggaggaggaagcaaacacgttcttctttacatggtggcagcaagaagaagtg
Downstream sequence
ctgagcaaaagagggaaaagccccttagaaaaccatcaaatctcatgagaactcactcactatcataagggtaacctccccagtgattaaattacctccc
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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