Basic Information
VIS ID
TVIS20003350
Fusion event
HPV-CLTCL1 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
25581428
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
NC_001526.2
Host Sequence
Chromosome
chr22
Cytoband
q11.21
Reference genome
GRCh37/hg19
Start
19240256/19252733 (Hg38)
End
19240256/19252733 (Hg38)
Location type
Intronic
Target gene
CLTCL1
Nearest miRNA
hsa-mir-3198-1/Upstream/1271772; hsa-let-7a-3/Downstream/711020;
Nearest TSS
ENST00000624155/Upstream/19912; ENST00000471259/Downstream/38928;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/73430, chr22-CpG: 62/Downstream/38415
Upstream sequence
TCATCAGGATTGAATGACGAAGATCTATGTCCCAAGTGCAAACATCCTGTAGTCCTCAAGTATCTGGTGACTGAATTAGCCACCAGGAATGAAAAAAGGg
Downstream sequence
gacgggcgcggtggctcacgcctgtaatcccagcactttgggaggccaaggcgggcggatcacgaggtcaggagatcaaggccatcctggctaacacgga
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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