VISDB Viral Integration Site DataBase

VIS ID

TVIS20003367

Fusion event

HPV-PRR14L integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2015

PubMed ID

Virus name

HPV

Subtype

HPV16

Reference genome

Chromosome

chr22

Cytoband

q12.2

Reference genome

Start

End

32115768/31719782 (Hg38)

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-27a-3p ; hsa-mir-1914-5p ; hsa-mir-1254 ; hsa-mir-505-5p ; hsa-mir-671-5p ; hsa-mir-615-3p ; hsa-mir-484 ; hsa-mir-320a ; hsa-mir-23b-3p ; hsa-mir-92a-3p ; hsa-mir-5011-5p ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-4470 ; hsa-mir-4268 ; hsa-mir-3155b ; hsa-mir-3155a ; hsa-mir-3714 ; hsa-mir-3910 ; hsa-mir-124-3p ; hsa-mir-506-3p ; hsa-mir-302c-5p ; hsa-mir-3138 ; hsa-mir-302d-5p ; hsa-mir-302b-5p ; hsa-mir-545-5p ; hsa-mir-4686 ; hsa-mir-3974 ; hsa-mir-4796-3p ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-500a-3p ; hsa-mir-203a-3p ; hsa-mir-6804-3p ; hsa-mir-633 ; hsa-mir-4703-5p ; hsa-mir-4643 ; hsa-mir-3942-5p ; hsa-mir-107 ; hsa-mir-103a-3p ; hsa-mir-203b-3p ; hsa-mir-7158-3p ; hsa-mir-591 ; hsa-mir-410-3p ; hsa-mir-5692b ; hsa-mir-5692c ; hsa-mir-888-3p ; hsa-mir-1277-5p ; hsa-mir-606 ; hsa-mir-3124-5p ; hsa-mir-8052 ; hsa-mir-3199 ; hsa-mir-3607-3p ; hsa-mir-130b-5p ; hsa-mir-3140-5p ; hsa-mir-4668-3p ; hsa-mir-19b-3p ; hsa-mir-19a-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-93-5p ; hsa-mir-17-5p ; hsa-mir-1183 ; hsa-mir-1284 ; hsa-mir-1-3p ; hsa-mir-182-3p ; hsa-mir-19a-5p ; hsa-mir-19b-1-5p ; hsa-mir-19b-2-5p ; hsa-mir-2052 ; hsa-mir-2053 ; hsa-mir-206 ; hsa-mir-214-3p ; hsa-mir-21-5p ; hsa-mir-3125 ; hsa-mir-3137 ; hsa-mir-3619-5p ; hsa-mir-377-5p ; hsa-mir-3916 ; hsa-mir-4291 ; hsa-mir-4469 ; hsa-mir-4684-5p ; hsa-mir-4751 ; hsa-mir-510-5p ; hsa-mir-512-5p ; hsa-mir-520f-5p ; hsa-mir-548n ; hsa-mir-5571-5p ; hsa-mir-5579-3p ; hsa-mir-5690 ; hsa-mir-569 ; hsa-mir-590-5p ; hsa-mir-6086 ; hsa-mir-613 ; hsa-mir-655-5p ; hsa-mir-6787-3p ; hsa-mir-6859-5p ; hsa-mir-761 ; hsa-mir-8055 ; hsa-mir-877-5p ; hsa-mir-922

Nearest miRNA

hsa-mir-1286/Upstream/98251; hsa-let-7a-3/Downstream/1716800;

Nearest TSS

Nearest CpG islands

None/Target, chr22-CpG: 279/Upstream/57445, chr22-CpG: 58/Downstream/29867

Upstream sequence

aaagagccctgactgtgaagccagaccagctaagcttcaatcatggctctgtgacactttttttttttttttgagacagggtctcgctttgttgcctagg

Downstream sequence

ctggagtgcagtggtgccatcatggctcactgcagcctccaactcctgggctcaagtgatcctctcacctccgcctcccaaggagctgggactgtaggca